diff --git a/urjtag/Makefile.am b/urjtag/Makefile.am
index 0e009dd5..52505062 100644
--- a/urjtag/Makefile.am
+++ b/urjtag/Makefile.am
@@ -28,6 +28,7 @@ SUBDIRS = \
 	include/urjtag \
 	data \
 	src \
+	src/apps/jtag \
 	po
 
 DIST_SUBDIRS = \
diff --git a/urjtag/configure.ac b/urjtag/configure.ac
index 49f35932..e6f0b1cc 100644
--- a/urjtag/configure.ac
+++ b/urjtag/configure.ac
@@ -71,6 +71,8 @@ AC_CONFIG_FILES(
 	src/svf/Makefile
 	src/bsdl/Makefile
 	src/jim/Makefile
+	src/global/Makefile
+	src/apps/jtag/Makefile
 	po/Makefile.in
 )
 
diff --git a/urjtag/src/Makefile.am b/urjtag/src/Makefile.am
index 5f3e8ba0..c6736ff2 100644
--- a/urjtag/src/Makefile.am
+++ b/urjtag/src/Makefile.am
@@ -30,8 +30,7 @@ SUBDIRS = \
 	part \
 	bus \
 	cmd \
-	global \
-	apps/jtag
+	global
 
 if ENABLE_SVF
 SUBDIRS += svf